MALDISTAR Publications

 

MALDISTAR at Ourcon VII (Oct. 28-31, Saint-Malo, France)

 

Talks from the workshop "A MALDISTAR is born", Oct. 28, 2019:

• Hopf, Carsten: Introduction to MALDISTAR (PDF)

• Balluff, Benjamin: Batch effects in mass spectrometry imaging (PDF)

• Boskamp, Tobias: Quality assessment and cross-normalization for MALDI MSI (PDF)

• Sammour, Denis: Goals and next steps (PDF)

 

Find a summary of the interactive poll done during the workshop and the audience's responses here...

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Journal publications

• Cordes J, Enzlein T, Marsching C, Hinze M, Engelhardt S, Hopf C, Wolf I: M2aia—Interactive, fast, and memory-efficient analysis of 2D and 3D multi-modal mass spectrometry imaging data, GigaScience 2021 Jul, 10(7).

• Enzlein T, Cordes J, Munteanu B, Michno W, Serneels L, De Strooper B, Hanrieder J, Wolf I, Chávez-Gutiérrez L, Hopf C: Computational Analysis of Alzheimer Amyloid Plaque Composition in 2D- and Elastically Reconstructed 3D-MALDI MS Images. Anal. Chem. 2020, 92(1):1301-1308.​

• Boskamp T, Lachmund D, Casadonte R, Hauberg-Lotte L, Kobarg JH, Kriegsmann J, Maaß P: Using the chemical noise background in MALDI mass spectrometry imaging for mass alignment and calibration. Anal. Chem. 2020, 92(1):1301-1308.​

• Föll MC, Moritz L, Wollmann T, Stillger MN, Vockert N, Werner M, et al. Accessible and reproducible mass spectrometry imaging data analysis in Galaxy. GigaScience. 2019 Dec 1;8(12).

• Ly, A., Longuespée, R., Casadonte, R., Wandernoth, P., Schwamborn, K., Bollwein, C., Marsching, C., Kriegsmann, K., Hopf, C., Weichert, W., Kriegsmann, J., Schirmacher, P., Kriegsmann, M., Deininger, S. Site‐to‐Site Reproducibility and Spatial Resolution in MALDI–MSI of Peptides from Formalin‐Fixed Paraffin‐Embedded Samples. Prot. Clin. Appl. 2019; 13(1):1800029.

• Föll MC, Fahrner M, Oria VO, Kühs M, Biniossek ML, Werner M, et al.: Reproducible proteomics sample preparation for single FFPE tissue slices using acid-labile surfactant and direct trypsinization. Clin Proteomics. 2018 Dec;15(1):11.

• Erich K, Sammour DA, Marx A, Hopf C. Scores for standardization of on-tissue digestion of formalin-fixed paraffin-embedded tissue in MALDI-MS imaging. Biochim Biophys Acta. 2017 Jul;1865(7):907-915.

• Oetjen J, Lachmund D, Palmer A, Alexandrov T, Becker M, Boskamp T, Maass P. An approach to optimize sample preparation for MALDI imaging MS of FFPE sections using fractional factorial design of experiments. Anal Bioanal Chem. 2016 Sep;408(24):6729-40.

• Schwartz M, Meyer B, Wirnitzer B, Hopf C. Standardized processing of MALDI imaging raw data for enhancement of weak analyte signals in mouse models of gastric cancer and Alzheimer's disease. Anal Bioanal Chem. 2015 Mar;407(8):2255-64.

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Conference talks

• Boskamp, T, et al. Quantifying matrix signal and data quality in MALDI peptide and glycan imaging by mass defect filtering. Mass Spectrometry Imaging Conference OurCon VII, Saint-Malo, France, 2019. (PDF)

• Boskamp T, et al. A novel cross-normalization method for MALDI TOF peptide imaging for improved inter-lab comparability and multi-center studies. ASMS Conference on Mass Spectrometry and Allied Topics, San Diego (CA), USA, 2018. (PDF)

• Sammour D, Scores for comparing on-tissue digestion methods of formalin-fixed paraffin-embedded tissue in MALDI-MS imaging. Mass Spectrometry Imaging Conference OurCon IV, Ustron, Poland, 2016 (PDF)

• Boskamp T, et al. Visualizing MALDI-TOF data of FFPE Tissue for Quality Assessment and Comparison. Mass Spectrometry Imaging Conference OurCon IV, Ustron, Poland, 2016. (PDF)

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​Poster presentations

• Boskamp T, Casadonte R, Hauberg-Lotte L, Oetjen J, Ly A, Deininger SO, Kobarg JH, Drake R, Kriegsmann J, Maaß P, Trede D. Quality assessment of MALDI TOF and ion mobility MSI data based on mass defect and CCS filtering. ASMS Conference on Mass Spectrometry and Allied Topics, 2020, Online Conference. (PDF)

• Kobarg JH, Deininger SO, Oetjen J, Koch A, Marsching C, Pascale A, Penazzi G, Kessler N, Timm W, Barsch A, Boskamp T, Neuweger H, Hopf C, Trede D. Automated feature finding and evaluation of m/z images based on CCS separation in MALDI TIMS imaging data. ASMS Conference on Mass Spectrometry and Allied Topics, 2020, Online Conference.

• Boskamp T, et al. Fully automated mass alignment and recalibration of MALDI TOF imaging data from N-linked glycans. ASMS Conference on Mass Spectrometry and Allied Topics, Atlanta (GA), USA, 2019. (PDF)

• Boskamp T, et al. Multi-centric evaluation of strategies for robust tissue classifiers in clinical applications of MALDI MSI. Mass Spectrometry Imaging Conference OurCon VI, Charleston (SC), USA, 2018. (PDF)

• Lachmund D, et al. Optimized MALDI IMS protocol for breast and ovarian cancer tissue obtained by a two-center method development and reproducibility study. ASMS Conference on Mass Spectrometry and Allied Topics, Indianapolis (IN), USA, 2017. (PDF)

• Boskamp T, et al. A novel cross-normalization method for MALDI TOF imaging data of FFPE tissue for enhanced comparability and biomarker discovery. Mass Spectrometry Imaging Conference OurCon V, Doorn, The Netherlands, 2017. (PDF)

• Sammour D, et al. Scores for standardization of on-tissue digestion of formalin-fixed paraffin-embedded tissue in MALDI-MS imaging. Mass Spectrometry Imaging Conference OurCon IV, Ustron, Poland, 2016. (PDF)

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